/EXTERNAL ENCODE/mapping_coverage/K005735_K005710_2_lane_gembs
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SAMPLE K005735_K005710_2_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
2834149070 |
100% |
355207922356 |
100% |
| Mapped |
2804059915 |
98.94 % |
350694549106 |
98.73 % |
| Passed |
1822246461 |
64.30 % |
203422531006 |
57.27 % |
| NotPassed |
981813454 |
34.64 % |
147272018100 |
41.46 % |
| |
|
|
|
|
| LowMAPQ |
621700570 |
21.94 % |
93255085500 |
26.25 % |
| MateUnmapped |
30089155 |
1.06 % |
4513373250 |
1.27 % |
| Duplicate |
298098161 |
10.52 % |
44714724150 |
12.59 % |
| BadOrientation |
1158 |
0.00 % |
173700 |
0.00 % |
| LargeInsertSize |
80062 |
0.00 % |
12009300 |
0.00 % |
| |
|
|
|
|
| NotCorrectlyAligned |
61933503 |
2.19 % |
9290025450 |
2.62 % |
| Unmapped |
30089155 |
1.06 % |
4513373250 |
1.27 % |
Base Level Counts
| Bases |
# |
% |
| Total |
273183702450 |
100% |
| Passed |
185542676232 |
67.92 % |
| Trimmed |
7490177822 |
2.74 % |
| Clipped |
952377308 |
0.35 % |
| Overlapping |
68808794136 |
25.19 % |
| LowQuality |
10389676952 |
3.80 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |