/EXTERNAL ENCODE/methylation/K005735_K005710_2_lane_gembs
BACK
SAMPLE K005735_K005710_2_lane_gembs
CpG counts
| Type |
Total |
Pass |
% |
| RefCpG |
27112515 |
24440820 |
90.15 % |
| NonRefCpG |
313745 |
249942 |
79.66 % |
Coverage CpGs
| Coverage Reference CpGs |
Coverage Information Reads Reference CpGs |
 |
 |
| Coverage Non Reference CpGs |
Coverage Information Reads Non-Reference CpGs |
 |
 |
Quality CpGs
| Genotype Quality Phred scaled Reference CpGs |
Genotype Quality Phred scaled Non-Reference CpGs |
 |
 |
Methylation CpGs
| CpGs Methylation Distribution |
 |
CpG Methylation Profile (From Individual Strands)
| Type |
#AllReferenceCpG |
% |
#PassedReferenceCpG |
% |
#AllNonReferenceCpG |
% |
#PassedNonReferenceCpG |
% |
| Unmethylated (0-0.3) |
14818735 |
27.58 % |
13209118 |
26.22 % |
185168 |
30.71 % |
153467 |
29.45 % |
| Intermediate (0.3-0.7) |
9805913 |
18.25 % |
8828949 |
17.52 % |
126482 |
20.98 % |
99910 |
19.17 % |
| Methylated (0.7-1) |
29106375 |
54.17 % |
28347534 |
56.26 % |
291215 |
48.31 % |
267732 |
51.38 % |
| |
|
|
|
|
|
|
|
|
| Median Methylation |
0.750 |
|
0.780 |
|
0.670 |
|
0.720 |
|