/EXTERNAL ENCODE/K005731_K005712_2_lane_gembs

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SAMPLE K005731_K005712_2_lane_gembs




Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 3725127478 100.00 % 1862563739 100.00 % 1862563739 100.00 %
General Reads 3673353223 98.61 % 1845193120 99.07 % 1828160103 98.15 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 9817835 0.26 % 4927205 0.26 % 4890630 0.26 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 41956420 1.13 % 12443414 0.67 % 29513006 1.58 %
Bisulfite_reads C2T 1872916654 50.28 % 940419350 50.49 % 932497304 50.07 %
Bisulfite_reads G2A 1810254404 48.60 % 909700975 48.84 % 900553429 48.35 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 1379317541
Average Unique 74.05 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 218940685124 38.92 % 93088207035 33.10 % 125852478089 44.75 %
Base Counts Overall C 59579994708 10.59 % 2989468587 1.06 % 56590526121 20.12 %
Base Counts Overall G 60191503869 10.70 % 56441963692 20.07 % 3749540177 1.33 %
Base Counts Overall T 219964462518 39.11 % 126828605811 45.10 % 93135856707 33.12 %
Base Counts Overall N 3817602959 0.68 % 1898879464 0.68 % 1918723495 0.68 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.9929227956225006
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 1528142991



Mapping Quality

Mapping Quality Histogram
K005731_K005712_2_lane_gembs.mapq.png



Insert Size Plot

Insert Size Histogram
K005731_K005712_2_lane_gembs.isize.png



Mapping Lanes Reports

LANE REPORTS
ENCFF007FYK_150bp_chastity
ENCFF363NHP_150bp_chastity