/EXTERNAL ENCODE/mapping_coverage/K005731_K005712_2_lane_gembs
BACK
SAMPLE K005731_K005712_2_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
3337082438 |
100% |
414748878067 |
100% |
| Mapped |
3309310176 |
99.17 % |
410583038767 |
99.00 % |
| Passed |
2080676362 |
62.35 % |
226287966667 |
54.56 % |
| NotPassed |
1228633814 |
36.82 % |
184295072100 |
44.44 % |
| |
|
|
|
|
| LowMAPQ |
806647166 |
24.17 % |
120997074900 |
29.17 % |
| MateUnmapped |
27772262 |
0.83 % |
4165839300 |
1.00 % |
| Duplicate |
345414403 |
10.35 % |
51812160450 |
12.49 % |
| BadOrientation |
1918 |
0.00 % |
287700 |
0.00 % |
| LargeInsertSize |
103298 |
0.00 % |
15494700 |
0.00 % |
| |
|
|
|
|
| NotCorrectlyAligned |
76467029 |
2.29 % |
11470054350 |
2.77 % |
| Unmapped |
27772262 |
0.83 % |
4165839300 |
1.00 % |
Base Level Counts
| Bases |
# |
% |
| Total |
311876010900 |
100% |
| Passed |
211665082341 |
67.87 % |
| Trimmed |
8588928697 |
2.75 % |
| Clipped |
914553667 |
0.29 % |
| Overlapping |
84673490566 |
27.15 % |
| LowQuality |
6033955629 |
1.93 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |