/EXTERNAL ENCODE/methylation/K005731_K005712_2_lane_gembs
BACK
SAMPLE K005731_K005712_2_lane_gembs
CpG counts
| Type |
Total |
Pass |
% |
| RefCpG |
27331587 |
24613717 |
90.06 % |
| NonRefCpG |
272946 |
216259 |
79.23 % |
Coverage CpGs
| Coverage Reference CpGs |
Coverage Information Reads Reference CpGs |
 |
 |
| Coverage Non Reference CpGs |
Coverage Information Reads Non-Reference CpGs |
 |
 |
Quality CpGs
| Genotype Quality Phred scaled Reference CpGs |
Genotype Quality Phred scaled Non-Reference CpGs |
 |
 |
Methylation CpGs
| CpGs Methylation Distribution |
 |
CpG Methylation Profile (From Individual Strands)
| Type |
#AllReferenceCpG |
% |
#PassedReferenceCpG |
% |
#AllNonReferenceCpG |
% |
#PassedNonReferenceCpG |
% |
| Unmethylated (0-0.3) |
13179847 |
24.34 % |
11551911 |
22.73 % |
133552 |
25.63 % |
107981 |
24.05 % |
| Intermediate (0.3-0.7) |
10433424 |
19.27 % |
9485162 |
18.66 % |
110236 |
21.15 % |
87188 |
19.41 % |
| Methylated (0.7-1) |
30529223 |
56.39 % |
29787532 |
58.61 % |
277316 |
53.22 % |
253910 |
56.54 % |
| |
|
|
|
|
|
|
|
|
| Median Methylation |
0.800 |
|
0.820 |
|
0.750 |
|
0.800 |
|