{
    "name": "Untitled", 
    "desc": "No description", 
    "flagstat_qc": [
        {
            "total": 47844982, 
            "total_qc_failed": 0, 
            "duplicates": 0, 
            "duplicates_qc_failed": 0, 
            "mapped": 45865116, 
            "mapped_qc_failed": 0, 
            "mapped_pct": 95.86, 
            "paired": 0, 
            "paired_qc_failed": 0, 
            "read1": 0, 
            "read1_qc_failed": 0, 
            "read2": 0, 
            "read2_qc_failed": 0, 
            "paired_properly": 0, 
            "paired_properly_qc_failed": 0, 
            "paired_properly_pct": 0.0, 
            "with_itself": 0, 
            "with_itself_qc_failed": 0, 
            "singletons": 0, 
            "singletons_qc_failed": 0, 
            "singletons_pct": 0.0, 
            "diff_chroms": 0, 
            "diff_chroms_qc_failed": 0
        }
    ], 
    "ctl_flagstat_qc": [
        {
            "total": 56344326, 
            "total_qc_failed": 0, 
            "duplicates": 0, 
            "duplicates_qc_failed": 0, 
            "mapped": 55312102, 
            "mapped_qc_failed": 0, 
            "mapped_pct": 98.17, 
            "paired": 0, 
            "paired_qc_failed": 0, 
            "read1": 0, 
            "read1_qc_failed": 0, 
            "read2": 0, 
            "read2_qc_failed": 0, 
            "paired_properly": 0, 
            "paired_properly_qc_failed": 0, 
            "paired_properly_pct": 0.0, 
            "with_itself": 0, 
            "with_itself_qc_failed": 0, 
            "singletons": 0, 
            "singletons_qc_failed": 0, 
            "singletons_pct": 0.0, 
            "diff_chroms": 0, 
            "diff_chroms_qc_failed": 0
        }
    ], 
    "dup_qc": [
        {
            "unpaired_reads": 35418981, 
            "paired_reads": 0, 
            "unmapped_reads": 0, 
            "unpaired_dupes": 4180674, 
            "paired_dupes": 0, 
            "paired_opt_dupes": 0, 
            "dupes_pct": 0.118035
        }
    ], 
    "ctl_dup_qc": [
        {
            "unpaired_reads": 42009635, 
            "paired_reads": 0, 
            "unmapped_reads": 0, 
            "unpaired_dupes": 3605916, 
            "paired_dupes": 0, 
            "paired_opt_dupes": 0, 
            "dupes_pct": 0.085835
        }
    ], 
    "pbc_qc": [
        {
            "total_read_pairs": 35416747, 
            "distinct_read_pairs": 31515942, 
            "one_read_pair": 28282368, 
            "two_read_pair": 2711357, 
            "NRF": 0.88986, 
            "PBC1": 0.897399, 
            "PBC2": 10.431075
        }
    ], 
    "ctl_pbc_qc": [
        {
            "total_read_pairs": 41805386, 
            "distinct_read_pairs": 38499557, 
            "one_read_pair": 35447825, 
            "two_read_pair": 2836458, 
            "NRF": 0.920923, 
            "PBC1": 0.920733, 
            "PBC2": 12.497215
        }
    ], 
    "nodup_flagstat_qc": [
        {
            "total": 31238307, 
            "total_qc_failed": 0, 
            "duplicates": 0, 
            "duplicates_qc_failed": 0, 
            "mapped": 31238307, 
            "mapped_qc_failed": 0, 
            "mapped_pct": 100.0, 
            "paired": 0, 
            "paired_qc_failed": 0, 
            "read1": 0, 
            "read1_qc_failed": 0, 
            "read2": 0, 
            "read2_qc_failed": 0, 
            "paired_properly": 0, 
            "paired_properly_qc_failed": 0, 
            "paired_properly_pct": 0.0, 
            "with_itself": 0, 
            "with_itself_qc_failed": 0, 
            "singletons": 0, 
            "singletons_qc_failed": 0, 
            "singletons_pct": 0.0, 
            "diff_chroms": 0, 
            "diff_chroms_qc_failed": 0
        }
    ], 
    "ctl_nodup_flagstat_qc": [
        {
            "total": 38403719, 
            "total_qc_failed": 0, 
            "duplicates": 0, 
            "duplicates_qc_failed": 0, 
            "mapped": 38403719, 
            "mapped_qc_failed": 0, 
            "mapped_pct": 100.0, 
            "paired": 0, 
            "paired_qc_failed": 0, 
            "read1": 0, 
            "read1_qc_failed": 0, 
            "read2": 0, 
            "read2_qc_failed": 0, 
            "paired_properly": 0, 
            "paired_properly_qc_failed": 0, 
            "paired_properly_pct": 0.0, 
            "with_itself": 0, 
            "with_itself_qc_failed": 0, 
            "singletons": 0, 
            "singletons_qc_failed": 0, 
            "singletons_pct": 0.0, 
            "diff_chroms": 0, 
            "diff_chroms_qc_failed": 0
        }
    ], 
    "overlap_reproducibility_qc": {
        "Nt": 0, 
        "N1": 33450, 
        "Np": 0, 
        "N_opt": 33450, 
        "N_consv": 33450, 
        "opt_set": "rep1-pr", 
        "consv_set": "rep1-pr", 
        "rescue_ratio": 0.0, 
        "self_consistency_ratio": 1.0, 
        "reproducibility": "pass"
    }, 
    "xcor_score": [
        {
            "num_reads": 15000000, 
            "est_frag_len": 210, 
            "corr_est_frag_len": 0.290703023253108, 
            "phantom_peak": 35, 
            "corr_phantom_peak": 0.2883316, 
            "argmin_corr": 1500, 
            "min_corr": 0.2030395, 
            "NSC": 1.431756, 
            "RSC": 1.027803
        }
    ], 
    "frip_macs2_qc": {
        "rep1": {
            "FRiP": 0.420321798947
        }, 
        "rep1-pr1": {
            "FRiP": 0.412456199335
        }, 
        "rep1-pr2": {
            "FRiP": 0.41248821327
        }
    }, 
    "overlap_frip_qc": {
        "rep1-pr": {
            "FRiP": 0.408462717116
        }
    }, 
    "jsd_qc": [
        {
            "pct_gen_enrich": 0.151363639258, 
            "auc": 0.489534355003, 
            "ch_div": 0.199588543187, 
            "elbow_pt": 1.99851262519e-77, 
            "jsd": 0.818925014095, 
            "syn_auc": 0.495609679951, 
            "syn_elbow_pt": 0.385253044894, 
            "syn_jsd": 0.496456911935
        }
    ]
}
