/EXTERNAL KNIH/K006231_1_lane_gembs/KEP20140008.Bisulfite-Seq.DNA_Methylation.EGAX00001411706.KNIH010-D_2

BACK

SAMPLE K006231_1_lane_gembs LANE KEP20140008.Bisulfite-Seq.DNA_Methylation.EGAX00001411706.KNIH010-D_2

Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 1915340100 100.00 % 957670050 100.00 % 957670050 100.00 %
General Reads 1863641911 97.30 % 937125918 97.85 % 926515993 96.75 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 11588711 0.61 % 5825435 0.61 % 5763276 0.60 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 40109478 2.09 % 14718697 1.54 % 25390781 2.65 %
Bisulfite_reads C2T 960141187 50.13 % 482740411 50.41 % 477400776 49.85 %
Bisulfite_reads G2A 915089435 47.78 % 460210942 48.06 % 454878493 47.50 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 791391287
Average Unique 82.64 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 75860096742 38.83 % 29481114591 30.18 % 46378982151 47.48 %
Base Counts Overall C 21015132370 10.76 % 1038602905 1.06 % 19976529465 20.45 %
Base Counts Overall G 20630768618 10.56 % 19911086101 20.38 % 719682517 0.74 %
Base Counts Overall T 75462489504 38.63 % 46183530086 47.28 % 29278959418 29.97 %
Base Counts Overall N 2396202966 1.23 % 1068011417 1.09 % 1328191549 1.36 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.9989292182160691
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 908024753



Mapping Quality

Mapping Quality Histogram
KEP20140008.Bisulfite-Seq.DNA_Methylation.EGAX00001411706.KNIH010-D_2.mapq.png



Read Length

Read Length Reads
101 957670050
101 957670050



Insert Size Plot

Insert Size Histogram
KEP20140008.Bisulfite-Seq.DNA_Methylation.EGAX00001411706.KNIH010-D_2.isize.png