/EXTERNAL KNIH/mapping_coverage/K006231_1_lane_gembs
BACK
SAMPLE K006231_1_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
1782731241 |
100% |
160866388317 |
100% |
| Mapped |
1751227782 |
98.23 % |
157684538958 |
98.02 % |
| Passed |
1422119917 |
79.77 % |
124444644593 |
77.36 % |
| NotPassed |
329107865 |
18.46 % |
33239894365 |
20.66 % |
| |
|
|
|
|
| LowMAPQ |
225022650 |
12.62 % |
22727287650 |
14.13 % |
| MateUnmapped |
31503459 |
1.77 % |
3181849359 |
1.98 % |
| Duplicate |
80943113 |
4.54 % |
8175254413 |
5.08 % |
| BadOrientation |
24 |
0.00 % |
2424 |
0.00 % |
| LargeInsertSize |
8774 |
0.00 % |
886174 |
0.00 % |
| |
|
|
|
|
| NotCorrectlyAligned |
23133304 |
1.30 % |
2336463704 |
1.45 % |
| Unmapped |
31503459 |
1.77 % |
3181849359 |
1.98 % |
Base Level Counts
| Bases |
# |
% |
| Total |
143629890019 |
100% |
| Passed |
115577832362 |
80.47 % |
| Trimmed |
6121620350 |
4.26 % |
| Clipped |
213271576 |
0.15 % |
| Overlapping |
18971973850 |
13.21 % |
| LowQuality |
2745191881 |
1.91 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |