/EXTERNAL KNIH/methylation/K006231_1_lane_gembs

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SAMPLE K006231_1_lane_gembs




CpG counts

Type Total Pass %
RefCpG 26823926 24021072 89.55 %
NonRefCpG 286256 214912 75.08 %

Coverage CpGs




Coverage Reference CpGs Coverage Information Reads Reference CpGs
./IMG//K006231_1_lane_gembs_coverage_refCpG.png ./IMG//K006231_1_lane_gembs_coverage_refCpGInf.png



Coverage Non Reference CpGs Coverage Information Reads Non-Reference CpGs
./IMG//K006231_1_lane_gembs_coverage_nonRefCpG.png ./IMG//K006231_1_lane_gembs_coverage_nonRefCpGinf.png

Quality CpGs




Genotype Quality Phred scaled Reference CpGs Genotype Quality Phred scaled Non-Reference CpGs
./IMG//K006231_1_lane_gembs_quality_refcpg.png ./IMG//K006231_1_lane_gembs_quality_nonRefCpg.png

Methylation CpGs




CpGs Methylation Distribution
./IMG//K006231_1_lane_gembs_methylation_levels.png

CpG Methylation Profile (From Individual Strands)

Type #AllReferenceCpG % #PassedReferenceCpG % #AllNonReferenceCpG % #PassedNonReferenceCpG %
Unmethylated (0-0.3) 6331377 11.96 % 5198051 10.58 % 51975 9.56 % 23255 5.24 %
Intermediate (0.3-0.7) 8490386 16.04 % 7468927 15.20 % 98209 18.07 % 68441 15.44 %
Methylated (0.7-1) 38125473 72.01 % 36462152 74.22 % 393303 72.37 % 351717 79.32 %
Median Methylation 0.850 0.850 0.840 0.870