/EXTERNAL KNIH/K006228_1_lane_gembs

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SAMPLE K006228_1_lane_gembs




Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 1827832616 100.00 % 913916308 100.00 % 913916308 100.00 %
General Reads 1777441262 97.24 % 894420825 97.87 % 883020437 96.62 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 11806108 0.65 % 5938110 0.65 % 5867998 0.64 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 38585246 2.11 % 13557373 1.48 % 25027873 2.74 %
Bisulfite_reads C2T 917412587 50.19 % 461586545 50.51 % 455826042 49.88 %
Bisulfite_reads G2A 871834783 47.70 % 438772390 48.01 % 433062393 47.39 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 749308235
Average Unique 81.99 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 71755728104 38.49 % 27937103376 29.97 % 43818624728 47.01 %
Base Counts Overall C 20896008173 11.21 % 1057236317 1.13 % 19838771856 21.28 %
Base Counts Overall G 20528548946 11.01 % 19844906288 21.29 % 683642658 0.73 %
Base Counts Overall T 71083584067 38.13 % 43376511872 46.53 % 27707072195 29.72 %
Base Counts Overall N 2175057542 1.17 % 1003705563 1.08 % 1171351979 1.26 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.9985930665408261
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 865832584



Mapping Quality

Mapping Quality Histogram
K006228_1_lane_gembs.mapq.png



Insert Size Plot

Insert Size Histogram
K006228_1_lane_gembs.isize.png



Mapping Lanes Reports

LANE REPORTS
KEP20140006.Bisulfite-Seq.DNA_Methylation.EGAX00001411702.KNIH007-D_2