/EXTERNAL KNIH/K006228_1_lane_gembs/KEP20140006.Bisulfite-Seq.DNA_Methylation.EGAX00001411702.KNIH007-D_2

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SAMPLE K006228_1_lane_gembs LANE KEP20140006.Bisulfite-Seq.DNA_Methylation.EGAX00001411702.KNIH007-D_2

Mapping Stats (Reads)

Concept	Total Reads	%	Pair One Reads	%	Pair Two Reads	%
Sequenced Reads	1827832616	100.00 %	913916308	100.00 %	913916308	100.00 %
General Reads	1777441262	97.24 %	894420825	97.87 %	883020437	96.62 %
Reads in Control sequences	0	0.00 %	0	0.00 %	0	0.00 %
Reads under conversion control	11806108	0.65 %	5938110	0.65 %	5867998	0.64 %
Reads over conversion control	0	0.00 %	0	0.00 %	0	0.00 %
Unmapped reads	38585246	2.11 %	13557373	1.48 %	25027873	2.74 %
Bisulfite_reads C2T	917412587	50.19 %	461586545	50.51 %	455826042	49.88 %
Bisulfite_reads G2A	871834783	47.70 %	438772390	48.01 %	433062393	47.39 %

Uniqueness (Fragments)

Concept	Value
Unique Fragments	749308235
Average Unique	81.99 %

Mapping Stats (Bases)

Concept	Total Bases	%	Pair One Bases	%	Pair Two Bases	%
Base Counts Overall A	71755728104	38.49 %	27937103376	29.97 %	43818624728	47.01 %
Base Counts Overall C	20896008173	11.21 %	1057236317	1.13 %	19838771856	21.28 %
Base Counts Overall G	20528548946	11.01 %	19844906288	21.29 %	683642658	0.73 %
Base Counts Overall T	71083584067	38.13 %	43376511872	46.53 %	27707072195	29.72 %
Base Counts Overall N	2175057542	1.17 %	1003705563	1.08 %	1171351979	1.26 %

Bisulfite Conversion Rate

Bisulfite Conversion Type	Conversion Rate
Conversion Rate	0.9985930665408261
Over Conversion Rate	NA

Correct Pairs

Concept	Total Reads
Correct Pairs	865832584

Mapping Quality

Mapping Quality Histogram

Read Length

Read Length	Reads
101	913916308
101	913916308

Insert Size Plot

Insert Size Histogram