/EXTERNAL KNIH/K006227_1_lane_gembs

BACK

SAMPLE K006227_1_lane_gembs




Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 1879478206 100.00 % 939739103 100.00 % 939739103 100.00 %
General Reads 1827230235 97.22 % 918082257 97.70 % 909147978 96.74 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 14732089 0.78 % 7397281 0.79 % 7334808 0.78 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 37515882 2.00 % 14259565 1.52 % 23256317 2.47 %
Bisulfite_reads C2T 945634447 50.31 % 475106145 50.56 % 470528302 50.07 %
Bisulfite_reads G2A 896327877 47.69 % 450373393 47.93 % 445954484 47.46 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 768934402
Average Unique 81.82 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 75427098588 39.35 % 29401944135 30.67 % 46025154453 48.02 %
Base Counts Overall C 20088273641 10.48 % 937689944 0.98 % 19150583697 19.98 %
Base Counts Overall G 19884877687 10.37 % 19241908246 20.07 % 642969441 0.67 %
Base Counts Overall T 74157679748 38.68 % 45283133371 47.24 % 28874546377 30.12 %
Base Counts Overall N 2148847348 1.12 % 988712810 1.03 % 1160134538 1.21 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.9992424202976382
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 889988200



Mapping Quality

Mapping Quality Histogram
K006227_1_lane_gembs.mapq.png



Insert Size Plot

Insert Size Histogram
K006227_1_lane_gembs.isize.png



Mapping Lanes Reports

LANE REPORTS
KEP20140003.Bisulfite-Seq.DNA_Methylation.EGAX00001411701.KNIH006-D_2