/EXTERNAL KNIH/mapping_coverage/K006227_1_lane_gembs
BACK
SAMPLE K006227_1_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
1761737500 |
100% |
161491616025 |
100% |
| Mapped |
1731125512 |
98.26 % |
158399805237 |
98.09 % |
| Passed |
1404535185 |
79.72 % |
125414182210 |
77.66 % |
| NotPassed |
326590327 |
18.54 % |
32985623027 |
20.43 % |
| |
|
|
|
|
| LowMAPQ |
232771768 |
13.21 % |
23509948568 |
14.56 % |
| MateUnmapped |
30611988 |
1.74 % |
3091810788 |
1.91 % |
| Duplicate |
65502018 |
3.72 % |
6615703818 |
4.10 % |
| BadOrientation |
8 |
0.00 % |
808 |
0.00 % |
| LargeInsertSize |
10074 |
0.00 % |
1017474 |
0.00 % |
| |
|
|
|
|
| NotCorrectlyAligned |
28306459 |
1.61 % |
2858952359 |
1.77 % |
| Unmapped |
30611988 |
1.74 % |
3091810788 |
1.91 % |
Base Level Counts
| Bases |
# |
% |
| Total |
141853204372 |
100% |
| Passed |
116132846929 |
81.87 % |
| Trimmed |
6124239106 |
4.32 % |
| Clipped |
232873189 |
0.16 % |
| Overlapping |
16206148973 |
11.42 % |
| LowQuality |
3157096175 |
2.23 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |