/EXTERNAL KNIH/methylation/K006227_1_lane_gembs

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SAMPLE K006227_1_lane_gembs




CpG counts

Type Total Pass %
RefCpG 26917365 23809303 88.45 %
NonRefCpG 285228 214924 75.35 %

Coverage CpGs




Coverage Reference CpGs Coverage Information Reads Reference CpGs
./IMG//K006227_1_lane_gembs_coverage_refCpG.png ./IMG//K006227_1_lane_gembs_coverage_refCpGInf.png



Coverage Non Reference CpGs Coverage Information Reads Non-Reference CpGs
./IMG//K006227_1_lane_gembs_coverage_nonRefCpG.png ./IMG//K006227_1_lane_gembs_coverage_nonRefCpGinf.png

Quality CpGs




Genotype Quality Phred scaled Reference CpGs Genotype Quality Phred scaled Non-Reference CpGs
./IMG//K006227_1_lane_gembs_quality_refcpg.png ./IMG//K006227_1_lane_gembs_quality_nonRefCpg.png

Methylation CpGs




CpGs Methylation Distribution
./IMG//K006227_1_lane_gembs_methylation_levels.png

CpG Methylation Profile (From Individual Strands)

Type #AllReferenceCpG % #PassedReferenceCpG % #AllNonReferenceCpG % #PassedNonReferenceCpG %
Unmethylated (0-0.3) 7175264 13.51 % 5950320 12.15 % 59379 10.92 % 31008 6.97 %
Intermediate (0.3-0.7) 13127120 24.71 % 11814106 24.13 % 152014 27.95 % 119510 26.86 %
Methylated (0.7-1) 32824339 61.78 % 31196103 63.72 % 332405 61.13 % 294444 66.17 %
Median Methylation 0.780 0.790 0.780 0.800