/EXTERNAL KNIH/K006232_1_lane_gembs

BACK

SAMPLE K006232_1_lane_gembs




Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 1866475230 100.00 % 933237615 100.00 % 933237615 100.00 %
General Reads 1813093805 97.14 % 912317694 97.76 % 900776111 96.52 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 10445418 0.56 % 5252951 0.56 % 5192467 0.56 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 42936007 2.30 % 15666970 1.68 % 27269037 2.92 %
Bisulfite_reads C2T 939447936 50.33 % 472666991 50.65 % 466780945 50.02 %
Bisulfite_reads G2A 884091287 47.37 % 444903654 47.67 % 439187633 47.06 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 752941006
Average Unique 80.68 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 73580028985 38.65 % 28902112848 30.36 % 44677916137 46.94 %
Base Counts Overall C 20815381896 10.93 % 1086782399 1.14 % 19728599497 20.73 %
Base Counts Overall G 20445962477 10.74 % 19770974935 20.77 % 674987542 0.71 %
Base Counts Overall T 73036477365 38.36 % 44361197311 46.60 % 28675280054 30.12 %
Base Counts Overall N 2502622737 1.31 % 1069169237 1.12 % 1433453500 1.51 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.9985076592257325
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 879712612



Mapping Quality

Mapping Quality Histogram
K006232_1_lane_gembs.mapq.png



Insert Size Plot

Insert Size Histogram
K006232_1_lane_gembs.isize.png



Mapping Lanes Reports

LANE REPORTS
KEP20140009.Bisulfite-Seq.DNA_Methylation.EGAX00001411705.KNIH011-D_2