/EXTERNAL KNIH/mapping_coverage/K006232_1_lane_gembs
BACK
SAMPLE K006232_1_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
1756396001 |
100% |
156017751387 |
100% |
| Mapped |
1722311386 |
98.06 % |
152575205272 |
97.79 % |
| Passed |
1395154935 |
79.43 % |
119532403721 |
76.61 % |
| NotPassed |
327156451 |
18.63 % |
33042801551 |
21.18 % |
| |
|
|
|
|
| LowMAPQ |
246624718 |
14.04 % |
24909096518 |
15.97 % |
| MateUnmapped |
34084615 |
1.94 % |
3442546115 |
2.21 % |
| Duplicate |
56732579 |
3.23 % |
5729990479 |
3.67 % |
| BadOrientation |
28 |
0.00 % |
2828 |
0.00 % |
| LargeInsertSize |
10534 |
0.00 % |
1063934 |
0.00 % |
| |
|
|
|
|
| NotCorrectlyAligned |
23788592 |
1.35 % |
2402647792 |
1.54 % |
| Unmapped |
34084615 |
1.94 % |
3442546115 |
2.21 % |
Base Level Counts
| Bases |
# |
% |
| Total |
140906821343 |
100% |
| Passed |
110840888701 |
78.66 % |
| Trimmed |
5935713169 |
4.21 % |
| Clipped |
224909429 |
0.16 % |
| Overlapping |
21149508193 |
15.01 % |
| LowQuality |
2755801851 |
1.96 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |