/EXTERNAL KNIH/methylation/K006232_1_lane_gembs

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SAMPLE K006232_1_lane_gembs




CpG counts

Type Total Pass %
RefCpG 26901100 23144365 86.04 %
NonRefCpG 292233 208814 71.45 %

Coverage CpGs




Coverage Reference CpGs Coverage Information Reads Reference CpGs
./IMG//K006232_1_lane_gembs_coverage_refCpG.png ./IMG//K006232_1_lane_gembs_coverage_refCpGInf.png



Coverage Non Reference CpGs Coverage Information Reads Non-Reference CpGs
./IMG//K006232_1_lane_gembs_coverage_nonRefCpG.png ./IMG//K006232_1_lane_gembs_coverage_nonRefCpGinf.png

Quality CpGs




Genotype Quality Phred scaled Reference CpGs Genotype Quality Phred scaled Non-Reference CpGs
./IMG//K006232_1_lane_gembs_quality_refcpg.png ./IMG//K006232_1_lane_gembs_quality_nonRefCpg.png

Methylation CpGs




CpGs Methylation Distribution
./IMG//K006232_1_lane_gembs_methylation_levels.png

CpG Methylation Profile (From Individual Strands)

Type #AllReferenceCpG % #PassedReferenceCpG % #AllNonReferenceCpG % #PassedNonReferenceCpG %
Unmethylated (0-0.3) 7470188 14.09 % 5929622 12.34 % 75201 13.53 % 39053 8.83 %
Intermediate (0.3-0.7) 12747844 24.05 % 11202473 23.31 % 152171 27.38 % 116113 26.25 %
Methylated (0.7-1) 32785804 61.86 % 30918189 64.35 % 328484 59.10 % 287170 64.92 %
Median Methylation 0.790 0.800 0.770 0.800