/EXTERNAL KNIH/K006224_1_lane_gembs/KEP20140003.Bisulfite-Seq.DNA_Methylation.EGAX00001411698.KNIH003-D_2

BACK

SAMPLE K006224_1_lane_gembs LANE KEP20140003.Bisulfite-Seq.DNA_Methylation.EGAX00001411698.KNIH003-D_2

Mapping Stats (Reads)

Concept	Total Reads	%	Pair One Reads	%	Pair Two Reads	%
Sequenced Reads	2272063570	100.00 %	1136031785	100.00 %	1136031785	100.00 %
General Reads	2219134072	97.67 %	1117510575	98.37 %	1101623497	96.97 %
Reads in Control sequences	0	0.00 %	0	0.00 %	0	0.00 %
Reads under conversion control	13474215	0.59 %	6783572	0.60 %	6690643	0.59 %
Reads over conversion control	0	0.00 %	0	0.00 %	0	0.00 %
Unmapped reads	39455283	1.74 %	11737638	1.03 %	27717645	2.44 %
Bisulfite_reads C2T	1145316160	50.41 %	576684486	50.76 %	568631674	50.05 %
Bisulfite_reads G2A	1087292127	47.85 %	547609661	48.20 %	539682466	47.51 %

Uniqueness (Fragments)

Concept	Value
Unique Fragments	932606392
Average Unique	82.09 %

Mapping Stats (Bases)

Concept	Total Bases	%	Pair One Bases	%	Pair Two Bases	%
Base Counts Overall A	89857532402	38.77 %	35429397860	30.58 %	54428134542	46.97 %
Base Counts Overall C	24922040934	10.75 %	1021167434	0.88 %	23900873500	20.63 %
Base Counts Overall G	24658526560	10.64 %	23839763023	20.57 %	818763537	0.71 %
Base Counts Overall T	89112064829	38.45 %	54205420192	46.78 %	34906644637	30.12 %
Base Counts Overall N	3200319415	1.38 %	1379493561	1.19 %	1820825854	1.57 %

Bisulfite Conversion Rate

Bisulfite Conversion Type	Conversion Rate
Conversion Rate	0.9993737710297674
Over Conversion Rate	NA

Correct Pairs

Concept	Total Reads
Correct Pairs	1082813283

Mapping Quality

Mapping Quality Histogram

Read Length

Read Length	Reads
101	1136031785
101	1136031785

Insert Size Plot

Insert Size Histogram