/EXTERNAL KNIH/mapping_coverage/K006224_1_lane_gembs
BACK
SAMPLE K006224_1_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
2104937523 |
100% |
195233363062 |
100% |
| Mapped |
2071464229 |
98.41 % |
191852560368 |
98.27 % |
| Passed |
1637881659 |
77.81 % |
148060720798 |
75.84 % |
| NotPassed |
433582570 |
20.60 % |
43791839570 |
22.43 % |
| |
|
|
|
|
| LowMAPQ |
289551840 |
13.76 % |
29244735840 |
14.98 % |
| MateUnmapped |
33473294 |
1.59 % |
3380802694 |
1.73 % |
| Duplicate |
114200130 |
5.43 % |
11534213130 |
5.91 % |
| BadOrientation |
4 |
0.00 % |
404 |
0.00 % |
| LargeInsertSize |
13148 |
0.00 % |
1327948 |
0.00 % |
| |
|
|
|
|
| NotCorrectlyAligned |
29817448 |
1.42 % |
3011562248 |
1.54 % |
| Unmapped |
33473294 |
1.59 % |
3380802694 |
1.73 % |
Base Level Counts
| Bases |
# |
% |
| Total |
165421037252 |
100% |
| Passed |
137688622971 |
83.24 % |
| Trimmed |
7110186725 |
4.30 % |
| Clipped |
260343635 |
0.16 % |
| Overlapping |
17099972819 |
10.34 % |
| LowQuality |
3261911102 |
1.97 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |