/EXTERNAL KNIH/methylation/K006224_1_lane_gembs

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SAMPLE K006224_1_lane_gembs




CpG counts

Type Total Pass %
RefCpG 26856866 24339807 90.63 %
NonRefCpG 286855 218243 76.08 %

Coverage CpGs




Coverage Reference CpGs Coverage Information Reads Reference CpGs
./IMG//K006224_1_lane_gembs_coverage_refCpG.png ./IMG//K006224_1_lane_gembs_coverage_refCpGInf.png



Coverage Non Reference CpGs Coverage Information Reads Non-Reference CpGs
./IMG//K006224_1_lane_gembs_coverage_nonRefCpG.png ./IMG//K006224_1_lane_gembs_coverage_nonRefCpGinf.png

Quality CpGs




Genotype Quality Phred scaled Reference CpGs Genotype Quality Phred scaled Non-Reference CpGs
./IMG//K006224_1_lane_gembs_quality_refcpg.png ./IMG//K006224_1_lane_gembs_quality_nonRefCpg.png

Methylation CpGs




CpGs Methylation Distribution
./IMG//K006224_1_lane_gembs_methylation_levels.png

CpG Methylation Profile (From Individual Strands)

Type #AllReferenceCpG % #PassedReferenceCpG % #AllNonReferenceCpG % #PassedNonReferenceCpG %
Unmethylated (0-0.3) 6599804 12.45 % 5686184 11.44 % 55111 10.10 % 26857 5.96 %
Intermediate (0.3-0.7) 12530666 23.63 % 11479104 23.10 % 144994 26.57 % 114619 25.46 %
Methylated (0.7-1) 33900655 63.93 % 32520242 65.45 % 345660 63.33 % 308801 68.58 %
Median Methylation 0.790 0.800 0.790 0.810