/EXTERNAL KNIH/K006222_1_lane_gembs

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SAMPLE K006222_1_lane_gembs




Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 1951325258 100.00 % 975662629 100.00 % 975662629 100.00 %
General Reads 1901223837 97.43 % 954793404 97.86 % 946430433 97.00 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 13714903 0.70 % 6887035 0.71 % 6827868 0.70 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 36386518 1.86 % 13982190 1.43 % 22404328 2.30 %
Bisulfite_reads C2T 985426739 50.50 % 494863886 50.72 % 490562853 50.28 %
Bisulfite_reads G2A 929512001 47.63 % 466816553 47.85 % 462695448 47.42 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 798186956
Average Unique 81.81 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 75804934956 38.09 % 29500357367 29.64 % 46304577589 46.53 %
Base Counts Overall C 23015522719 11.56 % 1120010831 1.13 % 21895511888 22.00 %
Base Counts Overall G 22985299253 11.55 % 22227974723 22.34 % 757324530 0.76 %
Base Counts Overall T 74873180569 37.62 % 45584298709 45.81 % 29288881860 29.43 %
Base Counts Overall N 2356238819 1.18 % 1084946528 1.09 % 1271292291 1.28 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.9987727647035716
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 927692862



Mapping Quality

Mapping Quality Histogram
K006222_1_lane_gembs.mapq.png



Insert Size Plot

Insert Size Histogram
K006222_1_lane_gembs.isize.png



Mapping Lanes Reports

LANE REPORTS
KEP20140001.Bisulfite-Seq.DNA_Methylation.EGAX00001411696.KNIH001-D_2