/EXTERNAL KNIH/K006222_1_lane_gembs/KEP20140001.Bisulfite-Seq.DNA_Methylation.EGAX00001411696.KNIH001-D_2

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SAMPLE K006222_1_lane_gembs LANE KEP20140001.Bisulfite-Seq.DNA_Methylation.EGAX00001411696.KNIH001-D_2

Mapping Stats (Reads)

Concept	Total Reads	%	Pair One Reads	%	Pair Two Reads	%
Sequenced Reads	1951325258	100.00 %	975662629	100.00 %	975662629	100.00 %
General Reads	1901223837	97.43 %	954793404	97.86 %	946430433	97.00 %
Reads in Control sequences	0	0.00 %	0	0.00 %	0	0.00 %
Reads under conversion control	13714903	0.70 %	6887035	0.71 %	6827868	0.70 %
Reads over conversion control	0	0.00 %	0	0.00 %	0	0.00 %
Unmapped reads	36386518	1.86 %	13982190	1.43 %	22404328	2.30 %
Bisulfite_reads C2T	985426739	50.50 %	494863886	50.72 %	490562853	50.28 %
Bisulfite_reads G2A	929512001	47.63 %	466816553	47.85 %	462695448	47.42 %

Uniqueness (Fragments)

Concept	Value
Unique Fragments	798186956
Average Unique	81.81 %

Mapping Stats (Bases)

Concept	Total Bases	%	Pair One Bases	%	Pair Two Bases	%
Base Counts Overall A	75804934956	38.09 %	29500357367	29.64 %	46304577589	46.53 %
Base Counts Overall C	23015522719	11.56 %	1120010831	1.13 %	21895511888	22.00 %
Base Counts Overall G	22985299253	11.55 %	22227974723	22.34 %	757324530	0.76 %
Base Counts Overall T	74873180569	37.62 %	45584298709	45.81 %	29288881860	29.43 %
Base Counts Overall N	2356238819	1.18 %	1084946528	1.09 %	1271292291	1.28 %

Bisulfite Conversion Rate

Bisulfite Conversion Type	Conversion Rate
Conversion Rate	0.9987727647035716
Over Conversion Rate	NA

Correct Pairs

Concept	Total Reads
Correct Pairs	927692862

Mapping Quality

Mapping Quality Histogram

Read Length

Read Length	Reads
101	975662629
101	975662629

Insert Size Plot

Insert Size Histogram