/EXTERNAL KNIH/mapping_coverage/K006222_1_lane_gembs
BACK
SAMPLE K006222_1_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
1845295381 |
100% |
165094418979 |
100% |
| Mapped |
1814831708 |
98.35 % |
162017588006 |
98.14 % |
| Passed |
1484789036 |
80.46 % |
128683278134 |
77.95 % |
| NotPassed |
330042672 |
17.89 % |
33334309872 |
20.19 % |
| |
|
|
|
|
| LowMAPQ |
249122810 |
13.50 % |
25161403810 |
15.24 % |
| MateUnmapped |
30463673 |
1.65 % |
3076830973 |
1.86 % |
| Duplicate |
55934664 |
3.03 % |
5649401064 |
3.42 % |
| BadOrientation |
12 |
0.00 % |
1212 |
0.00 % |
| LargeInsertSize |
13720 |
0.00 % |
1385720 |
0.00 % |
| |
|
|
|
|
| NotCorrectlyAligned |
24971466 |
1.35 % |
2522118066 |
1.53 % |
| Unmapped |
30463673 |
1.65 % |
3076830973 |
1.86 % |
Base Level Counts
| Bases |
# |
% |
| Total |
149959743637 |
100% |
| Passed |
119755484866 |
79.86 % |
| Trimmed |
6314594467 |
4.21 % |
| Clipped |
207167341 |
0.14 % |
| Overlapping |
21069298162 |
14.05 % |
| LowQuality |
2613198801 |
1.74 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |