/EXTERNAL KNIH/methylation/K006222_1_lane_gembs

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SAMPLE K006222_1_lane_gembs




CpG counts

Type Total Pass %
RefCpG 26873151 23924222 89.03 %
NonRefCpG 299772 210583 70.25 %

Coverage CpGs




Coverage Reference CpGs Coverage Information Reads Reference CpGs
./IMG//K006222_1_lane_gembs_coverage_refCpG.png ./IMG//K006222_1_lane_gembs_coverage_refCpGInf.png



Coverage Non Reference CpGs Coverage Information Reads Non-Reference CpGs
./IMG//K006222_1_lane_gembs_coverage_nonRefCpG.png ./IMG//K006222_1_lane_gembs_coverage_nonRefCpGinf.png

Quality CpGs




Genotype Quality Phred scaled Reference CpGs Genotype Quality Phred scaled Non-Reference CpGs
./IMG//K006222_1_lane_gembs_quality_refcpg.png ./IMG//K006222_1_lane_gembs_quality_nonRefCpg.png

Methylation CpGs




CpGs Methylation Distribution
./IMG//K006222_1_lane_gembs_methylation_levels.png

CpG Methylation Profile (From Individual Strands)

Type #AllReferenceCpG % #PassedReferenceCpG % #AllNonReferenceCpG % #PassedNonReferenceCpG %
Unmethylated (0-0.3) 6822126 12.90 % 5949149 12.12 % 75196 13.21 % 34219 7.57 %
Intermediate (0.3-0.7) 12668893 23.96 % 11297215 23.01 % 154114 27.07 % 117633 26.03 %
Methylated (0.7-1) 33391890 63.14 % 31846518 64.87 % 339927 59.72 % 299977 66.39 %
Median Methylation 0.790 0.800 0.770 0.800