/EXTERNAL KNIH/K006230_1_lane_gembs

BACK

SAMPLE K006230_1_lane_gembs




Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 1882434674 100.00 % 941217337 100.00 % 941217337 100.00 %
General Reads 1830688430 97.25 % 921578985 97.91 % 909109445 96.59 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 10902234 0.58 % 5485348 0.58 % 5416886 0.58 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 40844010 2.17 % 14153004 1.50 % 26691006 2.84 %
Bisulfite_reads C2T 942952193 50.09 % 474620343 50.43 % 468331850 49.76 %
Bisulfite_reads G2A 898638471 47.74 % 452443990 48.07 % 446194481 47.41 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 771534457
Average Unique 81.97 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 73846534704 38.46 % 28708899441 29.90 % 45137635263 47.02 %
Base Counts Overall C 21361915733 11.13 % 1088229857 1.13 % 20273685876 21.12 %
Base Counts Overall G 20921450201 10.90 % 20228253280 21.07 % 693196921 0.72 %
Base Counts Overall T 73363852578 38.21 % 44904750538 46.77 % 28459102040 29.64 %
Base Counts Overall N 2514583532 1.31 % 1074035258 1.12 % 1440548274 1.50 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.9986220352488708
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 889916586



Mapping Quality

Mapping Quality Histogram
K006230_1_lane_gembs.mapq.png



Insert Size Plot

Insert Size Histogram
K006230_1_lane_gembs.isize.png



Mapping Lanes Reports

LANE REPORTS
KEP20140007.Bisulfite-Seq.DNA_Methylation.EGAX00001411704.KNIH009-D_2