/EXTERNAL KNIH/K006230_1_lane_gembs/KEP20140007.Bisulfite-Seq.DNA_Methylation.EGAX00001411704.KNIH009-D_2

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SAMPLE K006230_1_lane_gembs LANE KEP20140007.Bisulfite-Seq.DNA_Methylation.EGAX00001411704.KNIH009-D_2

Mapping Stats (Reads)

Concept	Total Reads	%	Pair One Reads	%	Pair Two Reads	%
Sequenced Reads	1882434674	100.00 %	941217337	100.00 %	941217337	100.00 %
General Reads	1830688430	97.25 %	921578985	97.91 %	909109445	96.59 %
Reads in Control sequences	0	0.00 %	0	0.00 %	0	0.00 %
Reads under conversion control	10902234	0.58 %	5485348	0.58 %	5416886	0.58 %
Reads over conversion control	0	0.00 %	0	0.00 %	0	0.00 %
Unmapped reads	40844010	2.17 %	14153004	1.50 %	26691006	2.84 %
Bisulfite_reads C2T	942952193	50.09 %	474620343	50.43 %	468331850	49.76 %
Bisulfite_reads G2A	898638471	47.74 %	452443990	48.07 %	446194481	47.41 %

Uniqueness (Fragments)

Concept	Value
Unique Fragments	771534457
Average Unique	81.97 %

Mapping Stats (Bases)

Concept	Total Bases	%	Pair One Bases	%	Pair Two Bases	%
Base Counts Overall A	73846534704	38.46 %	28708899441	29.90 %	45137635263	47.02 %
Base Counts Overall C	21361915733	11.13 %	1088229857	1.13 %	20273685876	21.12 %
Base Counts Overall G	20921450201	10.90 %	20228253280	21.07 %	693196921	0.72 %
Base Counts Overall T	73363852578	38.21 %	44904750538	46.77 %	28459102040	29.64 %
Base Counts Overall N	2514583532	1.31 %	1074035258	1.12 %	1440548274	1.50 %

Bisulfite Conversion Rate

Bisulfite Conversion Type	Conversion Rate
Conversion Rate	0.9986220352488708
Over Conversion Rate	NA

Correct Pairs

Concept	Total Reads
Correct Pairs	889916586

Mapping Quality

Mapping Quality Histogram

Read Length

Read Length	Reads
101	941217337
101	941217337

Insert Size Plot

Insert Size Histogram