/EXTERNAL KNIH/mapping_coverage/K006230_1_lane_gembs
BACK
SAMPLE K006230_1_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
1768169472 |
100% |
160648840065 |
100% |
| Mapped |
1733586890 |
98.04 % |
157155999283 |
97.83 % |
| Passed |
1420162483 |
80.32 % |
125500134176 |
78.12 % |
| NotPassed |
313424407 |
17.73 % |
31655865107 |
19.71 % |
| |
|
|
|
|
| LowMAPQ |
226488976 |
12.81 % |
22875386576 |
14.24 % |
| MateUnmapped |
34582582 |
1.96 % |
3492840782 |
2.17 % |
| Duplicate |
62521897 |
3.54 % |
6314711597 |
3.93 % |
| BadOrientation |
4 |
0.00 % |
404 |
0.00 % |
| LargeInsertSize |
9716 |
0.00 % |
981316 |
0.00 % |
| |
|
|
|
|
| NotCorrectlyAligned |
24403814 |
1.38 % |
2464785214 |
1.53 % |
| Unmapped |
34582582 |
1.96 % |
3492840782 |
2.17 % |
Base Level Counts
| Bases |
# |
% |
| Total |
143432048492 |
100% |
| Passed |
116415386367 |
81.16 % |
| Trimmed |
6124122269 |
4.27 % |
| Clipped |
233638631 |
0.16 % |
| Overlapping |
17698275685 |
12.34 % |
| LowQuality |
2960625540 |
2.06 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |