/EXTERNAL KNIH/methylation/K006230_1_lane_gembs

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SAMPLE K006230_1_lane_gembs




CpG counts

Type Total Pass %
RefCpG 26847220 24153766 89.97 %
NonRefCpG 290041 215346 74.25 %

Coverage CpGs




Coverage Reference CpGs Coverage Information Reads Reference CpGs
./IMG//K006230_1_lane_gembs_coverage_refCpG.png ./IMG//K006230_1_lane_gembs_coverage_refCpGInf.png



Coverage Non Reference CpGs Coverage Information Reads Non-Reference CpGs
./IMG//K006230_1_lane_gembs_coverage_nonRefCpG.png ./IMG//K006230_1_lane_gembs_coverage_nonRefCpGinf.png

Quality CpGs




Genotype Quality Phred scaled Reference CpGs Genotype Quality Phred scaled Non-Reference CpGs
./IMG//K006230_1_lane_gembs_quality_refcpg.png ./IMG//K006230_1_lane_gembs_quality_nonRefCpg.png

Methylation CpGs




CpGs Methylation Distribution
./IMG//K006230_1_lane_gembs_methylation_levels.png

CpG Methylation Profile (From Individual Strands)

Type #AllReferenceCpG % #PassedReferenceCpG % #AllNonReferenceCpG % #PassedNonReferenceCpG %
Unmethylated (0-0.3) 7242900 13.67 % 6302948 12.76 % 63308 11.49 % 32482 7.25 %
Intermediate (0.3-0.7) 11279262 21.29 % 10204655 20.66 % 131654 23.90 % 100011 22.33 %
Methylated (0.7-1) 34469157 65.05 % 32893519 66.58 % 355948 64.61 % 315436 70.42 %
Median Methylation 0.800 0.810 0.790 0.820