/EXTERNAL CREST/K006437_1_lane_gembs/HPC28.Bisulfite-Seq.DNA_Methylation.JGAX00000006933_10

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SAMPLE K006437_1_lane_gembs LANE HPC28.Bisulfite-Seq.DNA_Methylation.JGAX00000006933_10

Mapping Stats (Reads)

Concept	Total Reads	%	Pair One Reads	%	Pair Two Reads	%
Sequenced Reads	1470281272	100.00 %	1470281272	100.00 %	0	0.00 %
General Reads	1400861065	95.28 %	1400861065	95.28 %	0	0.00 %
Reads in Control sequences	0	0.00 %	0	0.00 %	0	0.00 %
Reads under conversion control	31228703	2.12 %	31228703	2.12 %	0	0.00 %
Reads over conversion control	0	0.00 %	0	0.00 %	0	0.00 %
Unmapped reads	38191504	2.60 %	38191504	2.60 %	0	0.00 %
Bisulfite_reads C2T	712867887	48.49 %	712867887	48.49 %	0	0.00 %
Bisulfite_reads G2A	719221881	48.92 %	719221881	48.92 %	0	0.00 %

Uniqueness (Fragments)

Concept	Value
Unique Fragments	1127023256
Average Unique	78.70 %

Mapping Stats (Bases)

Concept	Total Bases	%	Pair One Bases	%	Pair Two Bases	%
Base Counts Overall A	69136370425	46.56 %
Base Counts Overall C	30853011923	20.78 %
Base Counts Overall G	4201521033	2.83 %
Base Counts Overall T	42772857303	28.80 %
Base Counts Overall N	1534647788	1.03 %

Bisulfite Conversion Rate

Bisulfite Conversion Type	Conversion Rate
Conversion Rate	0.9079968049437418
Over Conversion Rate	NA

Mapping Quality

Mapping Quality Histogram

Read Length

Read Length	Reads
100	1470281272