Sample K006437_1_lane_gembs
===========================

Mapping Stats (Reads)
---------------------

+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Concept                                     |Total Reads                                 |%                                           +============================================+============================================+===========================================+
|Sequenced Reads                             |1470281272                                  |100.00 %                                   |
+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|General Reads                               |1400861065                                  |95.28 %                                    |
+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Reads in Control sequences                  |0                                           |0.00 %                                     |
+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Reads under conversion control              |31228703                                    |2.12 %                                     |
+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Reads over conversion control               |0                                           |0.00 %                                     |
+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Unmapped reads                              |38191504                                    |2.60 %                                     |
+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Bisulfite_reads C2T                         |712867887                                   |48.49 %                                    |
+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Bisulfite_reads G2A                         |719221881                                   |48.92 %                                    |
+--------------------------------------------+--------------------------------------------+-------------------------------------------+

Uniqueness (Fragments)
----------------------

+--------------------------------------------+-------------------------------------------+
|Concept                                     |Value                                      |
+============================================+===========================================+
|Unique Fragments                            |1127023256                                 |
+--------------------------------------------+-------------------------------------------+
|Average Unique                              |78.70 %                                    |
+--------------------------------------------+-------------------------------------------+

Mapping Stats (Bases)
---------------------

+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Concept                                     |Total Bases                                 |%                                          |
+============================================+============================================+===========================================+
|Base Counts Overall A                       |69136370425                                 |46.56 %                                    |
+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Base Counts Overall C                       |30853011923                                 |20.78 %                                    |
+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Base Counts Overall G                       |4201521033                                  |2.83 %                                     |
+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Base Counts Overall T                       |42772857303                                 |28.80 %                                    |
+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Base Counts Overall N                       |1534647788                                  |1.03 %                                     |
+--------------------------------------------+--------------------------------------------+-------------------------------------------+

Mapping Quality Histogram
-------------------------

.. image:: K006437_1_lane_gembs_mapq.png

Bisulfite Conversion Rate
-------------------------

+--------------------------------------------+-------------------------------------------+
|Bisulfite Conversion Type                   |Conversion Rate                            |
+============================================+===========================================+
|Under Conversion Rate                       |0.9079968049437418                         |
+--------------------------------------------+-------------------------------------------+
|Over Conversion Rate                        |NA                                         |
+--------------------------------------------+-------------------------------------------+

Sample K006437_1_lane_gembs Lane HPC28.Bisulfite-Seq.DNA_Methylation.JGAX00000006933_10
---------------------------------------------------------------------------------------

Mapping Stats (Reads)
^^^^^^^^^^^^^^^^^^^^^

+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Concept                                     |Total Reads                                 |%                                           |P1 Reads                                    |%                                           |P2 Reads                                    |%                                          |
+============================================+============================================+============================================+============================================+============================================+============================================+===========================================+
|Sequenced Reads                             |1470281272                                  |100.00 %                                    |1470281272                                  |100.00 %                                    |0                                           |0.00 %                                     |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|General Reads                               |1400861065                                  |95.28 %                                     |1400861065                                  |95.28 %                                     |0                                           |0.00 %                                     |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Reads in Control sequences                  |0                                           |0.00 %                                      |0                                           |0.00 %                                      |0                                           |0.00 %                                     |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Reads under conversion control              |31228703                                    |2.12 %                                      |31228703                                    |2.12 %                                      |0                                           |0.00 %                                     |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Reads over conversion control               |0                                           |0.00 %                                      |0                                           |0.00 %                                      |0                                           |0.00 %                                     |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Unmapped reads                              |38191504                                    |2.60 %                                      |38191504                                    |2.60 %                                      |0                                           |0.00 %                                     |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Bisulfite_reads C2T                         |712867887                                   |48.49 %                                     |712867887                                   |48.49 %                                     |0                                           |0.00 %                                     |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Bisulfite_reads G2A                         |719221881                                   |48.92 %                                     |719221881                                   |48.92 %                                     |0                                           |0.00 %                                     |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+

Uniqueness (Fragments)
^^^^^^^^^^^^^^^^^^^^^^

+--------------------------------------------+-------------------------------------------+
|Concept                                     |Value                                      |
+============================================+===========================================+
|Unique Fragments                            |1127023256                                 |
+--------------------------------------------+-------------------------------------------+
|Average Unique                              |78.70 %                                    |
+--------------------------------------------+-------------------------------------------+

Mapping Stats (Bases)
^^^^^^^^^^^^^^^^^^^^^

+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Concept                                     |Total Bases                                 |%                                           |P1 Bases                                    |%                                           |P2 Bases                                    |%                                          |
+============================================+============================================+============================================+============================================+============================================+============================================+===========================================+
|Base Counts Overall A                       |69136370425                                 |46.56 %                                    |
+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Base Counts Overall C                       |30853011923                                 |20.78 %                                    |
+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Base Counts Overall G                       |4201521033                                  |2.83 %                                     |
+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Base Counts Overall T                       |42772857303                                 |28.80 %                                    |
+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Base Counts Overall N                       |1534647788                                  |1.03 %                                     |
+--------------------------------------------+--------------------------------------------+-------------------------------------------+

Bisulfite Conversion Rate
^^^^^^^^^^^^^^^^^^^^^^^^^

+--------------------------------------------+-------------------------------------------+
|Bisulfite Conversion Type                   |Conversion Rate                            |
+============================================+===========================================+
|Under Conversion Rate                       |0.9079968049437418                         |
+--------------------------------------------+-------------------------------------------+
|Over Conversion Rate                        |NA                                         |
+--------------------------------------------+-------------------------------------------+

Mapping Quality Histogram
^^^^^^^^^^^^^^^^^^^^^^^^^

.. image:: HPC28.Bisulfite-Seq.DNA_Methylation.JGAX00000006933_10_mapq.png

Read Length
^^^^^^^^^^^

+--------------------------------------------+-------------------------------------------+
|Read Length                                 |Reads                                      |
+============================================+===========================================+
|100                                         |1470281272                                 |
+--------------------------------------------+-------------------------------------------+

