/EXTERNAL CREST/methylation/K006437_1_lane_gembs

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SAMPLE K006437_1_lane_gembs




CpG counts

Type Total Pass %
RefCpG 25875382 17393308 67.22 %
NonRefCpG 338573 117903 34.82 %

Coverage CpGs




Coverage Reference CpGs Coverage Information Reads Reference CpGs
./IMG//K006437_1_lane_gembs_coverage_refCpG.png ./IMG//K006437_1_lane_gembs_coverage_refCpGInf.png



Coverage Non Reference CpGs Coverage Information Reads Non-Reference CpGs
./IMG//K006437_1_lane_gembs_coverage_nonRefCpG.png ./IMG//K006437_1_lane_gembs_coverage_nonRefCpGinf.png

Quality CpGs




Genotype Quality Phred scaled Reference CpGs Genotype Quality Phred scaled Non-Reference CpGs
./IMG//K006437_1_lane_gembs_quality_refcpg.png ./IMG//K006437_1_lane_gembs_quality_nonRefCpg.png

Methylation CpGs




CpGs Methylation Distribution
./IMG//K006437_1_lane_gembs_methylation_levels.png

CpG Methylation Profile (From Individual Strands)

Type #AllReferenceCpG % #PassedReferenceCpG % #AllNonReferenceCpG % #PassedNonReferenceCpG %
Unmethylated (0-0.3) 7432365 14.75 % 5288123 13.65 % 151783 24.72 % 35195 11.25 %
Intermediate (0.3-0.7) 12148231 24.11 % 8073799 20.84 % 169731 27.65 % 74321 23.76 %
Methylated (0.7-1) 30811927 61.14 % 25388080 65.52 % 292372 47.63 % 203301 64.99 %
Median Methylation 0.780 0.810 0.670 0.810