/EXTERNAL CREST/mapping_coverage/K006436_1_lane_gembs
BACK
SAMPLE K006436_1_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
1704020005 |
100% |
120302730395 |
100% |
| Mapped |
1704020005 |
100.00 % |
120302730395 |
100.00 % |
| Passed |
954259526 |
56.00 % |
93829715195 |
77.99 % |
| NotPassed |
749760479 |
44.00 % |
26473015200 |
22.01 % |
| |
|
|
|
|
| LowMAPQ |
264730152 |
15.54 % |
26473015200 |
22.01 % |
| MateUnmapped |
0 |
0.00 % |
0 |
0.00 % |
| Duplicate |
485030327 |
28.46 % |
0 |
0.00 % |
| BadOrientation |
0 |
0.00 % |
0 |
0.00 % |
| LargeInsertSize |
0 |
0.00 % |
0 |
0.00 % |
| |
|
|
|
|
| NotCorrectlyAligned |
0 |
0.00 % |
0 |
0.00 % |
| Unmapped |
0 |
0.00 % |
0 |
0.00 % |
Base Level Counts
| Bases |
# |
% |
| Total |
47850356900 |
100% |
| Passed |
43210682424 |
90.30 % |
| Trimmed |
2122699052 |
4.44 % |
| Clipped |
1978940295 |
4.14 % |
| Overlapping |
0 |
0.00 % |
| LowQuality |
538035129 |
1.12 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |