/EXTERNAL CREST/methylation/K006436_1_lane_gembs

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SAMPLE K006436_1_lane_gembs




CpG counts

Type Total Pass %
RefCpG 25576639 15996792 62.54 %
NonRefCpG 352524 103399 29.33 %

Coverage CpGs




Coverage Reference CpGs Coverage Information Reads Reference CpGs
./IMG//K006436_1_lane_gembs_coverage_refCpG.png ./IMG//K006436_1_lane_gembs_coverage_refCpGInf.png



Coverage Non Reference CpGs Coverage Information Reads Non-Reference CpGs
./IMG//K006436_1_lane_gembs_coverage_nonRefCpG.png ./IMG//K006436_1_lane_gembs_coverage_nonRefCpGinf.png

Quality CpGs




Genotype Quality Phred scaled Reference CpGs Genotype Quality Phred scaled Non-Reference CpGs
./IMG//K006436_1_lane_gembs_quality_refcpg.png ./IMG//K006436_1_lane_gembs_quality_nonRefCpg.png

Methylation CpGs




CpGs Methylation Distribution
./IMG//K006436_1_lane_gembs_methylation_levels.png

CpG Methylation Profile (From Individual Strands)

Type #AllReferenceCpG % #PassedReferenceCpG % #AllNonReferenceCpG % #PassedNonReferenceCpG %
Unmethylated (0-0.3) 8033896 16.19 % 5551165 15.23 % 178690 28.05 % 37756 13.02 %
Intermediate (0.3-0.7) 12895936 25.98 % 8102698 22.23 % 183749 28.84 % 73232 25.26 %
Methylated (0.7-1) 28699915 57.83 % 22791323 62.54 % 274640 43.11 % 178958 61.72 %
Median Methylation 0.760 0.790 0.620 0.790