/EXTERNAL CREST/mapping_coverage/K006433_1_lane_gembs
BACK
SAMPLE K006433_1_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
2697940461 |
100% |
180314650512 |
100% |
| Mapped |
2697940461 |
100.00 % |
180314650512 |
100.00 % |
| Passed |
1343886181 |
49.81 % |
142572637032 |
79.07 % |
| NotPassed |
1354054280 |
50.19 % |
37742013480 |
20.93 % |
| |
|
|
|
|
| LowMAPQ |
422641763 |
15.67 % |
37742013480 |
20.93 % |
| MateUnmapped |
0 |
0.00 % |
0 |
0.00 % |
| Duplicate |
931412517 |
34.52 % |
0 |
0.00 % |
| BadOrientation |
0 |
0.00 % |
0 |
0.00 % |
| LargeInsertSize |
0 |
0.00 % |
0 |
0.00 % |
| |
|
|
|
|
| NotCorrectlyAligned |
0 |
0.00 % |
0 |
0.00 % |
| Unmapped |
0 |
0.00 % |
0 |
0.00 % |
Base Level Counts
| Bases |
# |
% |
| Total |
60932469490 |
100% |
| Passed |
55191473141 |
90.58 % |
| Trimmed |
3091926752 |
5.07 % |
| Clipped |
1794492960 |
2.95 % |
| Overlapping |
0 |
0.00 % |
| LowQuality |
854576637 |
1.40 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |