/EXTERNAL CREST/methylation/K006433_1_lane_gembs

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SAMPLE K006433_1_lane_gembs




CpG counts

Type Total Pass %
RefCpG 26088623 17758993 68.07 %
NonRefCpG 317812 119923 37.73 %

Coverage CpGs




Coverage Reference CpGs Coverage Information Reads Reference CpGs
./IMG//K006433_1_lane_gembs_coverage_refCpG.png ./IMG//K006433_1_lane_gembs_coverage_refCpGInf.png



Coverage Non Reference CpGs Coverage Information Reads Non-Reference CpGs
./IMG//K006433_1_lane_gembs_coverage_nonRefCpG.png ./IMG//K006433_1_lane_gembs_coverage_nonRefCpGinf.png

Quality CpGs




Genotype Quality Phred scaled Reference CpGs Genotype Quality Phred scaled Non-Reference CpGs
./IMG//K006433_1_lane_gembs_quality_refcpg.png ./IMG//K006433_1_lane_gembs_quality_nonRefCpg.png

Methylation CpGs




CpGs Methylation Distribution
./IMG//K006433_1_lane_gembs_methylation_levels.png

CpG Methylation Profile (From Individual Strands)

Type #AllReferenceCpG % #PassedReferenceCpG % #AllNonReferenceCpG % #PassedNonReferenceCpG %
Unmethylated (0-0.3) 8375766 16.43 % 6030121 15.26 % 148439 25.38 % 41999 13.18 %
Intermediate (0.3-0.7) 13452692 26.39 % 9225420 23.35 % 172138 29.44 % 85563 26.86 %
Methylated (0.7-1) 29152512 57.18 % 24252933 61.39 % 264202 45.18 % 191012 59.96 %
Median Methylation 0.760 0.790 0.640 0.780