/EXTERNAL CREST/mapping_coverage/K006438_1_lane_gembs
BACK
SAMPLE K006438_1_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
2093205862 |
100% |
150505687030 |
100% |
| Mapped |
2093205862 |
100.00 % |
150505687030 |
100.00 % |
| Passed |
1134252855 |
54.19 % |
121286548830 |
80.59 % |
| NotPassed |
958953007 |
45.81 % |
29219138200 |
19.41 % |
| |
|
|
|
|
| LowMAPQ |
292191382 |
13.96 % |
29219138200 |
19.41 % |
| MateUnmapped |
0 |
0.00 % |
0 |
0.00 % |
| Duplicate |
666761625 |
31.85 % |
0 |
0.00 % |
| BadOrientation |
0 |
0.00 % |
0 |
0.00 % |
| LargeInsertSize |
0 |
0.00 % |
0 |
0.00 % |
| |
|
|
|
|
| NotCorrectlyAligned |
0 |
0.00 % |
0 |
0.00 % |
| Unmapped |
0 |
0.00 % |
0 |
0.00 % |
Base Level Counts
| Bases |
# |
% |
| Total |
56925127500 |
100% |
| Passed |
51587240608 |
90.62 % |
| Trimmed |
2598519431 |
4.56 % |
| Clipped |
1585842649 |
2.79 % |
| Overlapping |
0 |
0.00 % |
| LowQuality |
1153524812 |
2.03 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |