/EXTERNAL CREST/methylation/K006438_1_lane_gembs

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SAMPLE K006438_1_lane_gembs




CpG counts

Type Total Pass %
RefCpG 26040764 18240055 70.04 %
NonRefCpG 314472 128393 40.83 %

Coverage CpGs




Coverage Reference CpGs Coverage Information Reads Reference CpGs
./IMG//K006438_1_lane_gembs_coverage_refCpG.png ./IMG//K006438_1_lane_gembs_coverage_refCpGInf.png



Coverage Non Reference CpGs Coverage Information Reads Non-Reference CpGs
./IMG//K006438_1_lane_gembs_coverage_nonRefCpG.png ./IMG//K006438_1_lane_gembs_coverage_nonRefCpGinf.png

Quality CpGs




Genotype Quality Phred scaled Reference CpGs Genotype Quality Phred scaled Non-Reference CpGs
./IMG//K006438_1_lane_gembs_quality_refcpg.png ./IMG//K006438_1_lane_gembs_quality_nonRefCpg.png

Methylation CpGs




CpGs Methylation Distribution
./IMG//K006438_1_lane_gembs_methylation_levels.png

CpG Methylation Profile (From Individual Strands)

Type #AllReferenceCpG % #PassedReferenceCpG % #AllNonReferenceCpG % #PassedNonReferenceCpG %
Unmethylated (0-0.3) 7707943 15.14 % 5678317 14.12 % 133402 23.00 % 37091 11.29 %
Intermediate (0.3-0.7) 12029682 23.63 % 8346506 20.75 % 158037 27.25 % 78586 23.92 %
Methylated (0.7-1) 31164684 61.22 % 26198238 65.13 % 288611 49.76 % 212814 64.79 %
Median Methylation 0.790 0.810 0.690 0.810