Sample K006435_1_lane_gembs
===========================

Mapping Stats (Reads)
---------------------

+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Concept                                     |Total Reads                                 |%                                           +============================================+============================================+===========================================+
|Sequenced Reads                             |1476413088                                  |100.00 %                                   |
+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|General Reads                               |1301575130                                  |88.16 %                                    |
+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Reads in Control sequences                  |0                                           |0.00 %                                     |
+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Reads under conversion control              |20504251                                    |1.39 %                                     |
+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Reads over conversion control               |0                                           |0.00 %                                     |
+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Unmapped reads                              |154333707                                   |10.45 %                                    |
+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Bisulfite_reads C2T                         |657116406                                   |44.51 %                                    |
+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Bisulfite_reads G2A                         |664962975                                   |45.04 %                                    |
+--------------------------------------------+--------------------------------------------+-------------------------------------------+

Uniqueness (Fragments)
----------------------

+--------------------------------------------+-------------------------------------------+
|Concept                                     |Value                                      |
+============================================+===========================================+
|Unique Fragments                            |992890422                                  |
+--------------------------------------------+-------------------------------------------+
|Average Unique                              |75.10 %                                    |
+--------------------------------------------+-------------------------------------------+

Mapping Stats (Bases)
---------------------

+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Concept                                     |Total Bases                                 |%                                          |
+============================================+============================================+===========================================+
|Base Counts Overall A                       |69036615081                                 |46.30 %                                    |
+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Base Counts Overall C                       |31928784837                                 |21.41 %                                    |
+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Base Counts Overall G                       |5684627740                                  |3.81 %                                     |
+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Base Counts Overall T                       |40981529259                                 |27.48 %                                    |
+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Base Counts Overall N                       |1486164971                                  |1.00 %                                     |
+--------------------------------------------+--------------------------------------------+-------------------------------------------+

Mapping Quality Histogram
-------------------------

.. image:: K006435_1_lane_gembs_mapq.png

Bisulfite Conversion Rate
-------------------------

+--------------------------------------------+-------------------------------------------+
|Bisulfite Conversion Type                   |Conversion Rate                            |
+============================================+===========================================+
|Under Conversion Rate                       |0.8898518089843631                         |
+--------------------------------------------+-------------------------------------------+
|Over Conversion Rate                        |NA                                         |
+--------------------------------------------+-------------------------------------------+

Sample K006435_1_lane_gembs Lane HPC25.Bisulfite-Seq.DNA_Methylation.JGAX00000006931_9
--------------------------------------------------------------------------------------

Mapping Stats (Reads)
^^^^^^^^^^^^^^^^^^^^^

+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Concept                                     |Total Reads                                 |%                                           |P1 Reads                                    |%                                           |P2 Reads                                    |%                                          |
+============================================+============================================+============================================+============================================+============================================+============================================+===========================================+
|Sequenced Reads                             |1476413088                                  |100.00 %                                    |1476413088                                  |100.00 %                                    |0                                           |0.00 %                                     |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|General Reads                               |1301575130                                  |88.16 %                                     |1301575130                                  |88.16 %                                     |0                                           |0.00 %                                     |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Reads in Control sequences                  |0                                           |0.00 %                                      |0                                           |0.00 %                                      |0                                           |0.00 %                                     |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Reads under conversion control              |20504251                                    |1.39 %                                      |20504251                                    |1.39 %                                      |0                                           |0.00 %                                     |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Reads over conversion control               |0                                           |0.00 %                                      |0                                           |0.00 %                                      |0                                           |0.00 %                                     |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Unmapped reads                              |154333707                                   |10.45 %                                     |154333707                                   |10.45 %                                     |0                                           |0.00 %                                     |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Bisulfite_reads C2T                         |657116406                                   |44.51 %                                     |657116406                                   |44.51 %                                     |0                                           |0.00 %                                     |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Bisulfite_reads G2A                         |664962975                                   |45.04 %                                     |664962975                                   |45.04 %                                     |0                                           |0.00 %                                     |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+

Uniqueness (Fragments)
^^^^^^^^^^^^^^^^^^^^^^

+--------------------------------------------+-------------------------------------------+
|Concept                                     |Value                                      |
+============================================+===========================================+
|Unique Fragments                            |992890422                                  |
+--------------------------------------------+-------------------------------------------+
|Average Unique                              |75.10 %                                    |
+--------------------------------------------+-------------------------------------------+

Mapping Stats (Bases)
^^^^^^^^^^^^^^^^^^^^^

+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Concept                                     |Total Bases                                 |%                                           |P1 Bases                                    |%                                           |P2 Bases                                    |%                                          |
+============================================+============================================+============================================+============================================+============================================+============================================+===========================================+
|Base Counts Overall A                       |69036615081                                 |46.30 %                                    |
+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Base Counts Overall C                       |31928784837                                 |21.41 %                                    |
+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Base Counts Overall G                       |5684627740                                  |3.81 %                                     |
+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Base Counts Overall T                       |40981529259                                 |27.48 %                                    |
+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Base Counts Overall N                       |1486164971                                  |1.00 %                                     |
+--------------------------------------------+--------------------------------------------+-------------------------------------------+

Bisulfite Conversion Rate
^^^^^^^^^^^^^^^^^^^^^^^^^

+--------------------------------------------+-------------------------------------------+
|Bisulfite Conversion Type                   |Conversion Rate                            |
+============================================+===========================================+
|Under Conversion Rate                       |0.8898518089843631                         |
+--------------------------------------------+-------------------------------------------+
|Over Conversion Rate                        |NA                                         |
+--------------------------------------------+-------------------------------------------+

Mapping Quality Histogram
^^^^^^^^^^^^^^^^^^^^^^^^^

.. image:: HPC25.Bisulfite-Seq.DNA_Methylation.JGAX00000006931_9_mapq.png

Read Length
^^^^^^^^^^^

+--------------------------------------------+-------------------------------------------+
|Read Length                                 |Reads                                      |
+============================================+===========================================+
|100                                         |1476413088                                 |
+--------------------------------------------+-------------------------------------------+

