/EXTERNAL CREST/mapping_coverage/K006435_1_lane_gembs
BACK
SAMPLE K006435_1_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
1794997019 |
100% |
127679564599 |
100% |
| Mapped |
1794997019 |
100.00 % |
127679564599 |
100.00 % |
| Passed |
989933929 |
55.15 % |
99845606199 |
78.20 % |
| NotPassed |
805063090 |
44.85 % |
27833958400 |
21.80 % |
| |
|
|
|
|
| LowMAPQ |
278339584 |
15.51 % |
27833958400 |
21.80 % |
| MateUnmapped |
0 |
0.00 % |
0 |
0.00 % |
| Duplicate |
526723506 |
29.34 % |
0 |
0.00 % |
| BadOrientation |
0 |
0.00 % |
0 |
0.00 % |
| LargeInsertSize |
0 |
0.00 % |
0 |
0.00 % |
| |
|
|
|
|
| NotCorrectlyAligned |
0 |
0.00 % |
0 |
0.00 % |
| Unmapped |
0 |
0.00 % |
0 |
0.00 % |
Base Level Counts
| Bases |
# |
% |
| Total |
49651204000 |
100% |
| Passed |
44857240187 |
90.34 % |
| Trimmed |
2213459991 |
4.46 % |
| Clipped |
1947013324 |
3.92 % |
| Overlapping |
0 |
0.00 % |
| LowQuality |
633490498 |
1.28 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |