/EXTERNAL CREST/methylation/K006435_1_lane_gembs

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SAMPLE K006435_1_lane_gembs




CpG counts

Type Total Pass %
RefCpG 25752814 16774687 65.14 %
NonRefCpG 339050 111240 32.81 %

Coverage CpGs




Coverage Reference CpGs Coverage Information Reads Reference CpGs
./IMG//K006435_1_lane_gembs_coverage_refCpG.png ./IMG//K006435_1_lane_gembs_coverage_refCpGInf.png



Coverage Non Reference CpGs Coverage Information Reads Non-Reference CpGs
./IMG//K006435_1_lane_gembs_coverage_nonRefCpG.png ./IMG//K006435_1_lane_gembs_coverage_nonRefCpGinf.png

Quality CpGs




Genotype Quality Phred scaled Reference CpGs Genotype Quality Phred scaled Non-Reference CpGs
./IMG//K006435_1_lane_gembs_quality_refcpg.png ./IMG//K006435_1_lane_gembs_quality_nonRefCpg.png

Methylation CpGs




CpGs Methylation Distribution
./IMG//K006435_1_lane_gembs_methylation_levels.png

CpG Methylation Profile (From Individual Strands)

Type #AllReferenceCpG % #PassedReferenceCpG % #AllNonReferenceCpG % #PassedNonReferenceCpG %
Unmethylated (0-0.3) 7477319 14.94 % 5270799 14.02 % 162274 26.24 % 34292 11.44 %
Intermediate (0.3-0.7) 11763255 23.51 % 7504489 19.96 % 167376 27.07 % 68995 23.02 %
Methylated (0.7-1) 30791762 61.54 % 24815934 66.02 % 288731 46.69 % 196371 65.53 %
Median Methylation 0.790 0.820 0.660 0.810