/EXTERNAL CREST/mapping_coverage/K006432_1_lane_gembs
BACK
SAMPLE K006432_1_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
3890353768 |
100% |
277388281386 |
100% |
| Mapped |
3890353768 |
100.00 % |
277388281386 |
100.00 % |
| Passed |
1745766661 |
44.87 % |
220947201966 |
79.65 % |
| NotPassed |
2144587107 |
55.13 % |
56441079420 |
20.35 % |
| |
|
|
|
|
| LowMAPQ |
610529723 |
15.69 % |
56441079420 |
20.35 % |
| MateUnmapped |
0 |
0.00 % |
0 |
0.00 % |
| Duplicate |
1534057384 |
39.43 % |
0 |
0.00 % |
| BadOrientation |
0 |
0.00 % |
0 |
0.00 % |
| LargeInsertSize |
0 |
0.00 % |
0 |
0.00 % |
| |
|
|
|
|
| NotCorrectlyAligned |
0 |
0.00 % |
0 |
0.00 % |
| Unmapped |
0 |
0.00 % |
0 |
0.00 % |
Base Level Counts
| Bases |
# |
% |
| Total |
81404997485 |
100% |
| Passed |
73628900319 |
90.45 % |
| Trimmed |
3969678647 |
4.88 % |
| Clipped |
2679771040 |
3.29 % |
| Overlapping |
0 |
0.00 % |
| LowQuality |
1126647479 |
1.38 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |