/EXTERNAL CREST/methylation/K006432_1_lane_gembs

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SAMPLE K006432_1_lane_gembs




CpG counts

Type Total Pass %
RefCpG 26319514 20043371 76.15 %
NonRefCpG 289397 137623 47.56 %

Coverage CpGs




Coverage Reference CpGs Coverage Information Reads Reference CpGs
./IMG//K006432_1_lane_gembs_coverage_refCpG.png ./IMG//K006432_1_lane_gembs_coverage_refCpGInf.png



Coverage Non Reference CpGs Coverage Information Reads Non-Reference CpGs
./IMG//K006432_1_lane_gembs_coverage_nonRefCpG.png ./IMG//K006432_1_lane_gembs_coverage_nonRefCpGinf.png

Quality CpGs




Genotype Quality Phred scaled Reference CpGs Genotype Quality Phred scaled Non-Reference CpGs
./IMG//K006432_1_lane_gembs_quality_refcpg.png ./IMG//K006432_1_lane_gembs_quality_nonRefCpg.png

Methylation CpGs




CpGs Methylation Distribution
./IMG//K006432_1_lane_gembs_methylation_levels.png

CpG Methylation Profile (From Individual Strands)

Type #AllReferenceCpG % #PassedReferenceCpG % #AllNonReferenceCpG % #PassedNonReferenceCpG %
Unmethylated (0-0.3) 7905411 15.28 % 6395942 14.86 % 111073 20.68 % 38217 11.21 %
Intermediate (0.3-0.7) 12000323 23.20 % 9007942 20.93 % 146349 27.25 % 83878 24.60 %
Methylated (0.7-1) 31826128 61.52 % 27642107 64.22 % 279572 52.06 % 218930 64.20 %
Median Methylation 0.790 0.810 0.720 0.800