/EXTERNAL ENCODE/K005733_K005726_2_lane_gembs/ENCFF336KJH_125bp_chastity
BACK| Concept | Total Reads | % | Pair One Reads | % | Pair Two Reads | % |
|---|---|---|---|---|---|---|
| Sequenced Reads | 1048367014 | 100.00 % | 524183507 | 100.00 % | 524183507 | 100.00 % |
| General Reads | 1019367686 | 97.23 % | 510956246 | 97.48 % | 508411440 | 96.99 % |
| Reads in Control sequences | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Reads under conversion control | 6515902 | 0.62 % | 3271127 | 0.62 % | 3244775 | 0.62 % |
| Reads over conversion control | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Unmapped reads | 22483426 | 2.14 % | 9956134 | 1.90 % | 12527292 | 2.39 % |
| Bisulfite_reads C2T | 519962250 | 49.60 % | 260626364 | 49.72 % | 259335886 | 49.47 % |
| Bisulfite_reads G2A | 505921338 | 48.26 % | 253601009 | 48.38 % | 252320329 | 48.14 % |
| Concept | Value |
|---|---|
| Unique Fragments | 404221828 |
| Average Unique | 77.11 % |
| Concept | Total Bases | % | Pair One Bases | % | Pair Two Bases | % |
|---|---|---|---|---|---|---|
| Base Counts Overall A | 52848411555 | 39.22 % | 20491553423 | 30.41 % | 32356858132 | 48.02 % |
| Base Counts Overall C | 14003802710 | 10.39 % | 844466644 | 1.25 % | 13159336066 | 19.53 % |
| Base Counts Overall G | 14395957296 | 10.68 % | 13137250641 | 19.50 % | 1258706655 | 1.87 % |
| Base Counts Overall T | 52400090250 | 38.88 % | 32377619789 | 48.05 % | 20022470461 | 29.72 % |
| Base Counts Overall N | 1108809653 | 0.82 % | 527645235 | 0.78 % | 581164418 | 0.86 % |
| Bisulfite Conversion Type | Conversion Rate |
|---|---|
| Conversion Rate | 0.980198687847538 |
| Over Conversion Rate | NA |
| Concept | Total Reads |
|---|---|
| Correct Pairs | 457741057 |
| Mapping Quality Histogram |
|---|
| |
| Read Length | Reads |
|---|---|
| 125 | 472975282 |
| 151 | 51208225 |
| 125 | 472975282 |
| 151 | 51208225 |
| Insert Size Histogram |
|---|
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