/EXTERNAL ENCODE/K005733_K005726_2_lane_gembs/ENCFF413KHN_100bp_chastity
BACK| Concept | Total Reads | % | Pair One Reads | % | Pair Two Reads | % |
|---|---|---|---|---|---|---|
| Sequenced Reads | 1552449848 | 100.00 % | 776224924 | 100.00 % | 776224924 | 100.00 % |
| General Reads | 1451606411 | 93.50 % | 731584290 | 94.25 % | 720022121 | 92.76 % |
| Reads in Control sequences | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Reads under conversion control | 7230064 | 0.47 % | 3662338 | 0.47 % | 3567726 | 0.46 % |
| Reads over conversion control | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Unmapped reads | 93613373 | 6.03 % | 40978296 | 5.28 % | 52635077 | 6.78 % |
| Bisulfite_reads C2T | 742415360 | 47.82 % | 374179866 | 48.21 % | 368235494 | 47.44 % |
| Bisulfite_reads G2A | 716421115 | 46.15 % | 361066762 | 46.52 % | 355354353 | 45.78 % |
| Concept | Value |
|---|---|
| Unique Fragments | 573725333 |
| Average Unique | 73.91 % |
| Concept | Total Bases | % | Pair One Bases | % | Pair Two Bases | % |
|---|---|---|---|---|---|---|
| Base Counts Overall A | 60015137291 | 38.28 % | 23691445418 | 30.22 % | 36323691873 | 46.33 % |
| Base Counts Overall C | 18339127189 | 11.70 % | 1680344345 | 2.14 % | 16658782844 | 21.25 % |
| Base Counts Overall G | 17888583136 | 11.41 % | 15741714390 | 20.08 % | 2146868746 | 2.74 % |
| Base Counts Overall T | 58927867541 | 37.58 % | 36497995744 | 46.55 % | 22429871797 | 28.61 % |
| Base Counts Overall N | 1626719491 | 1.04 % | 787217427 | 1.00 % | 839502064 | 1.07 % |
| Bisulfite Conversion Type | Conversion Rate |
|---|---|
| Conversion Rate | 0.9828246340263754 |
| Over Conversion Rate | NA |
| Concept | Total Reads |
|---|---|
| Correct Pairs | 660790845 |
| Mapping Quality Histogram |
|---|
| |
| Read Length | Reads |
|---|---|
| 100 | 776224924 |
| 100 | 776224924 |
| Insert Size Histogram |
|---|
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