/EXTERNAL ENCODE/K005733_K005726_2_lane_gembs

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SAMPLE K005733_K005726_2_lane_gembs




Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 2600816862 100.00 % 1300408431 100.00 % 1300408431 100.00 %
General Reads 2470974097 95.01 % 1242540536 95.55 % 1228433561 94.47 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 13745966 0.53 % 6933465 0.53 % 6812501 0.52 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 116096799 4.46 % 50934430 3.92 % 65162369 5.01 %
Bisulfite_reads C2T 1262377610 48.54 % 634806230 48.82 % 627571380 48.26 %
Bisulfite_reads G2A 1222342453 47.00 % 614667771 47.27 % 607674682 46.73 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 977947161
Average Unique 75.20 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 112863548846 38.71 % 44182998841 30.31 % 68680550005 47.11 %
Base Counts Overall C 32342929899 11.09 % 2524810989 1.73 % 29818118910 20.45 %
Base Counts Overall G 32284540432 11.07 % 28878965031 19.81 % 3405575401 2.34 %
Base Counts Overall T 111327957791 38.18 % 68875615533 47.25 % 42452342258 29.12 %
Base Counts Overall N 2735529144 0.94 % 1314862662 0.90 % 1420666482 0.97 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.9814425010021328
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 1118531902



Mapping Quality

Mapping Quality Histogram
K005733_K005726_2_lane_gembs.mapq.png



Insert Size Plot

Insert Size Histogram
K005733_K005726_2_lane_gembs.isize.png



Mapping Lanes Reports

LANE REPORTS
ENCFF413KHN_100bp_chastity
ENCFF336KJH_125bp_chastity