/EXTERNAL ENCODE/mapping_coverage/K005733_K005726_2_lane_gembs
BACK
SAMPLE K005733_K005726_2_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
2261415991 |
100% |
237613058076 |
100% |
| Mapped |
2207792214 |
97.63 % |
231897094346 |
97.59 % |
| Passed |
1537715997 |
68.00 % |
158345049513 |
66.64 % |
| NotPassed |
670076217 |
29.63 % |
73552044833 |
30.95 % |
| |
|
|
|
|
| LowMAPQ |
404913082 |
17.91 % |
45354228734 |
19.09 % |
| MateUnmapped |
53623777 |
2.37 % |
5715963730 |
2.41 % |
| Duplicate |
213840927 |
9.46 % |
22401759087 |
9.43 % |
| BadOrientation |
176 |
0.00 % |
20606 |
0.00 % |
| LargeInsertSize |
15840 |
0.00 % |
1781764 |
0.00 % |
| |
|
|
|
|
| NotCorrectlyAligned |
51306192 |
2.27 % |
5794254642 |
2.44 % |
| Unmapped |
53623777 |
2.37 % |
5715963730 |
2.41 % |
Base Level Counts
| Bases |
# |
% |
| Total |
173923413373 |
100% |
| Passed |
144947166521 |
83.34 % |
| Trimmed |
6869956490 |
3.95 % |
| Clipped |
674276948 |
0.39 % |
| Overlapping |
14904086912 |
8.57 % |
| LowQuality |
6527926502 |
3.75 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |