/EXTERNAL ENCODE/methylation/K005733_K005726_2_lane_gembs
BACK
SAMPLE K005733_K005726_2_lane_gembs
CpG counts
| Type |
Total |
Pass |
% |
| RefCpG |
26959678 |
23095275 |
85.67 % |
| NonRefCpG |
295640 |
212008 |
71.71 % |
Coverage CpGs
| Coverage Reference CpGs |
Coverage Information Reads Reference CpGs |
 |
 |
| Coverage Non Reference CpGs |
Coverage Information Reads Non-Reference CpGs |
 |
 |
Quality CpGs
| Genotype Quality Phred scaled Reference CpGs |
Genotype Quality Phred scaled Non-Reference CpGs |
 |
 |
Methylation CpGs
| CpGs Methylation Distribution |
 |
CpG Methylation Profile (From Individual Strands)
| Type |
#AllReferenceCpG |
% |
#PassedReferenceCpG |
% |
#AllNonReferenceCpG |
% |
#PassedNonReferenceCpG |
% |
| Unmethylated (0-0.3) |
34084986 |
64.06 % |
30798407 |
63.90 % |
390963 |
69.02 % |
321516 |
70.58 % |
| Intermediate (0.3-0.7) |
7364733 |
13.84 % |
6231924 |
12.93 % |
79966 |
14.12 % |
52788 |
11.59 % |
| Methylated (0.7-1) |
11762201 |
22.10 % |
11165473 |
23.17 % |
95511 |
16.86 % |
81249 |
17.84 % |
| |
|
|
|
|
|
|
|
|
| Median Methylation |
0.130 |
|
0.120 |
|
0.100 |
|
0.090 |
|