/EXTERNAL ENCODE/K005745_K005725_2_lane_gembs/ENCFF106LFQ_150bp_chastity
BACK| Concept | Total Reads | % | Pair One Reads | % | Pair Two Reads | % |
|---|---|---|---|---|---|---|
| Sequenced Reads | 1180880700 | 100.00 % | 590440350 | 100.00 % | 590440350 | 100.00 % |
| General Reads | 1082542405 | 91.67 % | 547086671 | 92.66 % | 535455734 | 90.69 % |
| Reads in Control sequences | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Reads under conversion control | 31402283 | 2.66 % | 16023288 | 2.71 % | 15378995 | 2.60 % |
| Reads over conversion control | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Unmapped reads | 66936012 | 5.67 % | 27330391 | 4.63 % | 39605621 | 6.71 % |
| Bisulfite_reads C2T | 563144931 | 47.69 % | 284665100 | 48.21 % | 278479831 | 47.16 % |
| Bisulfite_reads G2A | 550799757 | 46.64 % | 278444859 | 47.16 % | 272354898 | 46.13 % |
| Concept | Value |
|---|---|
| Unique Fragments | 363889838 |
| Average Unique | 61.63 % |
| Concept | Total Bases | % | Pair One Bases | % | Pair Two Bases | % |
|---|---|---|---|---|---|---|
| Base Counts Overall A | 65282412042 | 36.61 % | 26704072214 | 29.95 % | 38578339828 | 43.27 % |
| Base Counts Overall C | 20640027770 | 11.58 % | 4375271325 | 4.91 % | 16264756445 | 18.24 % |
| Base Counts Overall G | 25440133794 | 14.27 % | 17803436620 | 19.97 % | 7636697174 | 8.57 % |
| Base Counts Overall T | 65763030361 | 36.88 % | 39679972321 | 44.51 % | 26083058040 | 29.26 % |
| Base Counts Overall N | 1187381733 | 0.67 % | 593740370 | 0.67 % | 593641363 | 0.67 % |
| Bisulfite Conversion Type | Conversion Rate |
|---|---|
| Conversion Rate | 0.9282528496365688 |
| Over Conversion Rate | NA |
| Concept | Total Reads |
|---|---|
| Correct Pairs | 412361059 |
| Mapping Quality Histogram |
|---|
| |
| Read Length | Reads |
|---|---|
| 150 | 590440350 |
| 150 | 590440350 |
| Insert Size Histogram |
|---|
 |