/EXTERNAL ENCODE/K005745_K005725_2_lane_gembs

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SAMPLE K005745_K005725_2_lane_gembs




Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 2800431856 100.00 % 1400215928 100.00 % 1400215928 100.00 %
General Reads 2570404164 91.79 % 1299312864 92.79 % 1271091300 90.78 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 66586953 2.38 % 33954761 2.42 % 32632192 2.33 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 163440739 5.84 % 66948303 4.78 % 96492436 6.89 %
Bisulfite_reads C2T 1333102492 47.60 % 673923718 48.13 % 659178774 47.08 %
Bisulfite_reads G2A 1303888625 46.56 % 659343907 47.09 % 644544718 46.03 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 868830470
Average Unique 62.05 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 154709809480 36.59 % 63364875021 29.97 % 91344934459 43.20 %
Base Counts Overall C 49838188833 11.79 % 10608602862 5.02 % 39229585971 18.55 %
Base Counts Overall G 59088702681 13.97 % 41851225363 19.79 % 17237477318 8.15 %
Base Counts Overall T 156414093942 36.99 % 94201138015 44.55 % 62212955927 29.42 %
Base Counts Overall N 2814415320 0.67 % 1406763867 0.67 % 1407651453 0.67 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.9294769132187287
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 981111915



Mapping Quality

Mapping Quality Histogram
K005745_K005725_2_lane_gembs.mapq.png



Insert Size Plot

Insert Size Histogram
K005745_K005725_2_lane_gembs.isize.png



Mapping Lanes Reports

LANE REPORTS
ENCFF337XLQ_150bp_chastity
ENCFF106LFQ_150bp_chastity