/EXTERNAL ENCODE/mapping_coverage/K005745_K005725_2_lane_gembs
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SAMPLE K005745_K005725_2_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
2206292575 |
100% |
310962289815 |
100% |
| Mapped |
2099156608 |
95.14 % |
294891894765 |
94.83 % |
| Passed |
934188989 |
42.34 % |
120146751915 |
38.64 % |
| NotPassed |
1164967619 |
52.80 % |
174745142850 |
56.19 % |
| |
|
|
|
|
| LowMAPQ |
692906054 |
31.41 % |
103935908100 |
33.42 % |
| MateUnmapped |
107135967 |
4.86 % |
16070395050 |
5.17 % |
| Duplicate |
401966666 |
18.22 % |
60294999900 |
19.39 % |
| BadOrientation |
322 |
0.00 % |
48300 |
0.00 % |
| LargeInsertSize |
58466 |
0.00 % |
8769900 |
0.00 % |
| |
|
|
|
|
| NotCorrectlyAligned |
70036111 |
3.17 % |
10505416650 |
3.38 % |
| Unmapped |
107135967 |
4.86 % |
16070395050 |
5.17 % |
Base Level Counts
| Bases |
# |
% |
| Total |
139812666000 |
100% |
| Passed |
105500871760 |
75.46 % |
| Trimmed |
3821939573 |
2.73 % |
| Clipped |
1317191614 |
0.94 % |
| Overlapping |
18348722471 |
13.12 % |
| LowQuality |
10823940582 |
7.74 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |